Isabela to San Cristobal Ferry
Book the full same-day connection via Santa Cruz on selected boats. If you prefer, you can also book the two legs separately on different days.
Need help deciding whether to book the same-day connection or split the trip? Jenny can help on WhatsApp before you pay.
Route type
Same-day connection via Santa Cruz
Morning departure
6:00 am from Isabela
Santa Cruz stop
Arrive around 8:00 am, continue at 3:00 pm
Luggage
Lockers available at the pier in Santa Cruz
Final arrival
Puerto Baquerizo Moreno, San Cristobal
Check-in
45 min early
Book your Isabela to San Cristobal ferry
This form books the full same-day connection via Santa Cruz. Need separate dates? Book the two legs separately on the Isabela to Santa Cruz ferry and the Santa Cruz to San Cristobal ferry pages.
Why book this route with Galapagos Transfers?
Only the most reliable boats
We only book you on operators we trust and that do not overbook.
Individual front-facing seats
A more comfortable ride matters when your island hop includes two legs in one day.
Local help when you need it
Jenny is local and can help with route doubts or timing changes. WhatsApp Jenny
How this Santa Cruz stop works
A same-day connection, not a direct crossing
You leave Isabela early, stop in Santa Cruz, and continue to San Cristobal in the afternoon. This page books the full itinerary, not just one ferry leg.
Luggage during the stop
Lockers are available at the pier in Santa Cruz, so you can move around without carrying your bags while you wait for the second boat.
Make the stop in Santa Cruz count
The morning stop in Santa Cruz gives you time to stretch your legs, eat, or see one of the island’s main spots before the afternoon leg. You can visit the Charles Darwin Research Station, walk to Tortuga Bay if you want beach time, head to Las Grietas for a short scenic outing, or simply enjoy the restaurants and shops in Puerto Ayora on Santa Cruz, the most populated island in the Galapagos.
Isabela to San Cristobal ferry FAQ
Is there a direct ferry from Isabela to San Cristobal?
No. This route runs via Santa Cruz. This page books the full same-day connection, with the morning leg, a stop in Santa Cruz, and the afternoon continuation to San Cristobal.
How does the Santa Cruz stop work?
You arrive in Puerto Ayora in the morning and continue at 3:00 pm. During the stop, you can leave your luggage in the lockers at the pier.
Do I need to do both ferries on the same day?
No. It is not mandatory to do both ferries on the same day. If you want more time in Santa Cruz or a slower travel day, you can book the two legs separately on different dates.
Can I book the two trips separately on different days?
Yes. Book the Isabela to Santa Cruz ferry on one date and the Santa Cruz to San Cristobal ferry on another if that works better for your itinerary.
What can I do in Santa Cruz during the stop?
You have time for the Charles Darwin Research Station, Tortuga Bay, Las Grietas, or a relaxed lunch and walk around Puerto Ayora.
Where do I board each leg?
The trip starts near Puerto Villamil pier in Isabela, connects through Gus Angermeyer pier in Santa Cruz, and ends at Hammerhead Shark dock in San Cristobal.
How early should I arrive?
Be at the pier at least 45 minutes before departure for check-in and luggage handling.
Can Jenny help me decide between same-day and split-day booking?
Yes. If you are unsure, Jenny can help on WhatsApp before you book.
Need help before you book?
If you are deciding whether this same-day connection is right for you or whether it makes more sense to split the trip across different dates, Jenny can help.
Or check our Frequently Asked Questions.